PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00267g07037.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family NF-YB
Protein Properties Length: 190aa    MW: 21484.5 Da    PI: 4.3452
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00267g07037.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB43.57.6e-1419114896
                     NF-YB   8 lPianvsrimkkvlP.....anakis..kdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 
                               lP + v r++k+ l      +n+ is  +d+     e +  fi ++++ a+d c++ kr+tin++d++ al ++ f +++eplk+
  Peinf101Scf00267g07037.1  19 LPKTIVRRLVKEKLTqlstdKNTDISllRDSLTAFSESARLFIHYLSATANDICKESKRQTINAEDVFKALEEIEFPEFIEPLKA 103
                               67777777777766522122455666446888899999*********************************************** PP

                     NF-YB  86 ylkkyrelege 96 
                                l+ +r+ +++
  Peinf101Scf00267g07037.1 104 SLEVFRQKNAK 114
                               ******98765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.107.3E-277119IPR009072Histone-fold
SuperFamilySSF471132.1E-2118128IPR009072Histone-fold
PfamPF008082.1E-81989IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.107.3E-27151165IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MGEVEKQKDK EKVVEQEGLP KTIVRRLVKE KLTQLSTDKN TDISLLRDSL TAFSESARLF  60
IHYLSATAND ICKESKRQTI NAEDVFKALE EIEFPEFIEP LKASLEVFRQ KNAKRKSGSS  120
KSTESNKKSK LKEPVENGRG KMKEQPSDNE NEDEQAEEEA VNENEDGQAE EESNGQAEEE  180
SDEQEASADD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2170044e-47AC217004.1 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence.
GenBankHG9755234e-47HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004251060.18e-84PREDICTED: DNA polymerase epsilon subunit 3
TrEMBLK4DA069e-84K4DA06_SOLLC; Uncharacterized protein
STRINGSolyc11g068480.1.12e-83(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA101612427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.18e-26nuclear factor Y, subunit B11